org.jmol.adapter.readers.xml
Class XmlXsdReader
java.lang.Object
org.jmol.adapter.smarter.AtomSetCollectionReader
org.jmol.adapter.readers.xml.XmlReader
org.jmol.adapter.readers.xml.XmlXsdReader
public class XmlXsdReader
- extends XmlReader
An XML reader for Materials Studio .xsd files http://accelrys.com/products/materials-studio/
Bob Hanson hansonr@stolaf.edu 6/3/09
Fields inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader |
ANGSTROMS_PER_BOHR, applySymmetryToBonds, atomSetCollection, bsFilter, bsModels, calculationType, doApplySymmetry, filter, getHeader, haveAtomFilter, havePartialChargeFilter, htParams, ignoreFileSymmetryOperators, ignoreFileUnitCell, iHaveSymmetryOperators, iHaveUnitCell, isTrajectory, latticeCells, line, modelNumber, needToApplySymmetry, next, prevline, reader, readerName, spaceGroup, templateAtomCount |
Method Summary |
private void |
fin()
|
private void |
init(XmlReader parent,
AtomSetCollection atomSetCollection)
|
void |
processEndElement(java.lang.String uri,
java.lang.String localName,
java.lang.String qName)
|
void |
processStartElement(java.lang.String namespaceURI,
java.lang.String localName,
java.lang.String qName,
java.util.HashMap atts)
|
protected void |
processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
java.io.BufferedReader reader,
netscape.javascript.JSObject DOMNode)
|
protected void |
processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
java.io.BufferedReader reader,
org.xml.sax.XMLReader xmlReader)
|
Methods inherited from class org.jmol.adapter.smarter.AtomSetCollectionReader |
addJmolScript, addPrimitiveLatticeVector, addSites, applySymmetryAndSetTrajectory, checkLineForScript, checkLineForScript, clearLatticeParameters, deducePdbElementSymbol, discardLines, discardLinesUntilBlank, discardLinesUntilContains, discardLinesUntilNonBlank, discardLinesUntilStartsWith, doGetModel, fillDataBlock, filterAtom, filterAtom, getElementSymbol, getStrings, getTokens, getTokens, getTokens, getTokensFloat, isLastModel, newAtomSet, parseFloat, parseFloat, parseFloat, parseInt, parseInt, parseInt, parseInt, parseToken, parseToken, parseToken, parseTokenNext, parseTrimmed, parseTrimmed, readData, readData, readLine, readLineTrimmed, setAtomCoord, setAtomCoord, setError, setFractionalCoordinates, setMOData, setSpaceGroupName, setSymmetryOperator, setTransform, setUnitCell, setUnitCellItem |
Methods inherited from class java.lang.Object |
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
xsdImplementedAttributes
java.lang.String[] xsdImplementedAttributes
bsBackbone
private java.util.BitSet bsBackbone
iChain
private int iChain
iGroup
private int iGroup
iAtom
private int iAtom
XmlXsdReader
public XmlXsdReader()
processXml
protected void processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
java.io.BufferedReader reader,
org.xml.sax.XMLReader xmlReader)
- Overrides:
processXml
in class XmlReader
processXml
protected void processXml(XmlReader parent,
AtomSetCollection atomSetCollection,
java.io.BufferedReader reader,
netscape.javascript.JSObject DOMNode)
- Overrides:
processXml
in class XmlReader
init
private void init(XmlReader parent,
AtomSetCollection atomSetCollection)
fin
private void fin()
processStartElement
public void processStartElement(java.lang.String namespaceURI,
java.lang.String localName,
java.lang.String qName,
java.util.HashMap atts)
- Overrides:
processStartElement
in class XmlReader
processEndElement
public void processEndElement(java.lang.String uri,
java.lang.String localName,
java.lang.String qName)
- Overrides:
processEndElement
in class XmlReader