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java.lang.Objectorg.jmol.jvxl.readers.SurfaceReader
org.jmol.jvxl.readers.SurfaceFileReader
org.jmol.jvxl.readers.VolumeFileReader
org.jmol.jvxl.readers.JaguarReader
class JaguarReader
Field Summary | |
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private float[] |
extents
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Fields inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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atomCount, canDownsample, endOfData, isAngstroms, negativeAtomCount |
Fields inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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binarydoc, br, line, next |
Constructor Summary | |
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JaguarReader(SurfaceGenerator sg,
java.io.BufferedReader br)
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Method Summary | |
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protected float |
nextVoxel()
read one value per line |
protected void |
readAtomCountAndOrigin()
skip initial stuff and read the origin= line |
protected void |
readTitleLines()
nothing much here |
protected void |
readVoxelVector(int voxelVectorIndex)
read the extentx=, extenty=, extentz= lines and cache them then read the npts= line and construct the necessary data |
Methods inherited from class org.jmol.jvxl.readers.VolumeFileReader |
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getNextVoxelValue, getVoxelBitSet, gotoData, readExtraLine, readSurfaceData, readVolumeData, readVolumeParameters, readVolumetricHeader, skipComments, skipData |
Methods inherited from class org.jmol.jvxl.readers.SurfaceFileReader |
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determineFileType, discardTempData, getTokens, parseFloat, parseFloat, parseInt, parseInt, parseIntNext, skipTo |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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private float[] extents
Constructor Detail |
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JaguarReader(SurfaceGenerator sg, java.io.BufferedReader br)
Method Detail |
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protected void readTitleLines() throws java.lang.Exception
readTitleLines
in class VolumeFileReader
java.lang.Exception
- -- generally a reader issueprotected void readAtomCountAndOrigin() throws java.lang.Exception
readAtomCountAndOrigin
in class VolumeFileReader
java.lang.Exception
- -- generally a reader issueprotected void readVoxelVector(int voxelVectorIndex) throws java.lang.Exception
readVoxelVector
in class VolumeFileReader
voxelVectorIndex
- 0, 1, or 2
java.lang.Exception
- -- generally a reader issueprotected float nextVoxel() throws java.lang.Exception
nextVoxel
in class VolumeFileReader
java.lang.Exception
- -- generally a reader issue
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